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Main /
CompleteProgramIntroduction NeurospinMaxfilter.sh is a shell program of pipeline from raw data to average. After a few preparations, only one command line on Linux window produces noise-reduced data & averaged data files for a given subject on all the runs. When you have several fif files or more, the program surely help to save your time. Step1 Preparation of parameter file for average 1. Transrate the format of a raw fif file. Enter the command line below maxfilter -f ### -nosss (### is a filename of raw fif file) 2. Ranch Maxfilter. Load the transformed file (***_nosss.fif) from the menue of Averager->Load raw data. Chose the option Save parameters to file, and input a filename of parameter file. Set thresholds for bad trial rejection from Averager->Rejection limits. Click Excute button. Then you will obtain a parameter file. Step2. Modification of shell program Rewrite the directory in which you put all fif files to be processed. Rewrite the directory in which you will output noise-reduced & average fif files. Indicate the name & location of parameter file. Modify analysis options if you need. (For details on the options, see MaxFilter manual.) Step3. Run shell program Move to the directry where you put the program. On a Linux window, enter sh NeurospinMaxfilter.sh Goal! After a long computational time, you will obtain noise-reduced data, head position, and average files. |